Links

We hope that you find this collection of links useful. It will be updated and amended from time to time. Of course, we can not guarantee that any link is functional, and the list is by no means exhaustive.

Bioinformatics Web Tools

Genome Browsers:

ENSEMBL
ENSEMBL Mouse Genome
UCSC Genome Bioinformatics
Mouse Genome Informatics (MGI)

Gene Annotation Warehouses:

GNF BioGPS
GeneCards
Entrez Gene (formerly Locuslink)
OMIM

DNA/Protein Search & Analysis Tools:

NCBI
BCM Search Launcher
SIB Expert Protein Analysis System (ExPASy)
Webcutter

miRNA/siRNA Tools & Resources:

miRNA Map
Dharmacon

Protein Structure Databases & Analysis Tools:

RCSB PDB
pdb viewer
Phyre Protein Homology/analogY Recognition Engine
e-Protein
Geno3D

More:

MGH Primer Bank
BACPAC Resources Center

Publicly Accessible Gene Expression Warehouses

GNF BioGPS
Gene Expression Omnibus (GEO)
ImmGen, Joslin Diabetes Center, Harvard University
Mouse Gene Prediction Database, University of Toronto
Oncogenomics Normal Tissue Database
TeraGenomics
Stanford Microarray Database

Genetic, Mouse, Cell/Tissue and DNA/RNA Resources

Mouse Strain Repositories and ES Cell Libraries:
International Mouse Strain Resource (IMSR)
International Gene Trap Consortium
The Jackson Labs
Mutant Mouse Regional Resource Centers (MMRRC)
European Mutant Mouse Archive (EMMA)
Oak Ridge National Laboratory
Bay Genomics
Lexicon Pharmaceuticals
Deltagen
Texas Institute for Genomic Medicine

QTL/Haplotype Mapping Resources & Mutation Databases:

Mouse Phenome Database (MPD)
GNF SNPster
International HapMap project
BTKbase (Mutation registry for X-linked agammaglobulinemia)

Cell Resources:

ATCC
Coriell Cell Repositories
Allcells
NIAID HIV/AIDS Specimen Repository

Plasmid & shRNA Repositories:

Addgene

Antibody, Hybridoma and MHC Tetramer Resources:

ATCC
NIH Tetramer Core Facility
Beckman-Coulter Flow Cytometry

Web Sites of Interest to Immunologists

Web site compilations:

Current Protocols in Immunology APPENDIX 1J

Databases:

Immune Epitope Database and Analysis Resource

Immunological mouse models:

Hogquist-Compilation of TCR Transgenic Mouse Models for Positive and Negative Selection Studies

Hedrick-Lab Webpage for AND TCR-Transgenic Mice

Free Scientific Software & Data Analysis Tools

Image Analysis software:

NIH Image (Mac)

ImageJ (PC)

Gene profiling data visualization software:

ArrayExpress

Tree View

ClustalW online

ClustalX download version

Protein Structure Viewers:

pdb viewer

Genetics Software:

Software for complex trait analysis (QTX)

More Tools:

Fluorescence spectra viewer

Some great free Scientific software packages

Best of the Web - Bioinformatics

Protocols and Methods

Cold Spring Harbor protocols

SciClips Bioprotocols

Current Protocols

TSRI Links

Department of Immunology Home Page

Graduate Program in Immunology

Immunology Affinity Group

Department of Immunology Research in Progress

TSRI Flow Cytometry Core Facility

Professional Organizations and Institutions

FASEB incl. FASEB Directory

American Association of Immunologists (AAI)

Gesellschaft fuer Biochemie und Molekularbiologie/German Society for Biochemistry and Molecular Biology (GBM)

American Association for the Advancement of Science (AAAS)

German Scholars Organization (GSO)

Search & Reference

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City of San Diego Website

San Diego Visitors & Convention Bureau

San Diego Area Traffic Report

San Diego Traffic with Driving Times

San Diego Area Map

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