2011 Lab Publications

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1. Teratoma generation in the testis capsule.
   Peterson SE, Tran HT, Garitaonandia I, Han S, Nickey KS, Leonardo T, Laurent LC, Loring JF.
   J Vis Exp. 2011 Nov 7;(57):e3177. doi: 10.3791/3177.
   PMID: 22158256 [PubMed - in process] Related citations
   
2. Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis.
   Wang YC, Nakagawa M, Garitaonandia I, Slavin I, Altun G, Lacharite RM, Nazor KL, Tran HT, Lynch CL, Leonardo TR, Liu Y, Peterson SE, Laurent LC, Yamanaka S, Loring JF.
   Cell Res. 2011 Nov;21(11):1551-63. doi: 10.1038/cr.2011.148. Epub 2011 Sep 6.
   PMID: 21894191 [PubMed - in process]
   
3. Epigenetic characterization of the FMR1 gene and aberrant neurodevelopment in human induced pluripotent stem cell models of fragile X syndrome.
   Sheridan SD, Theriault KM, Reis SA, Zhou F, Madison JM, Daheron L, Loring JF, Haggarty SJ.
   PLoS One. 2011;6(10):e26203. Epub 2011 Oct 12.
   PMID: 22022567 [PubMed - in process]  Free PMC Article   Related citations
   
4. Induced pluripotent stem cells from highly endangered species.
   Ben-Nun IF, Montague SC, Houck ML, Tran HT, Garitaonandia I, Leonardo TR, Wang YC, Charter SJ, Laurent LC, Ryder OA, Loring JF.
   Nat Methods. 2011 Sep 4;8(10):829-31. doi: 10.1038/nmeth.1706.
   PMID: 21892153 [PubMed - indexed for MEDLINE]  Related citations
   
5. Evidence that gene activation and silencing during stem cell differentiation requires a transcriptionally paused intermediate state.
   Golob JL, Kumar RM, Guenther MG, Pabon LM, Pratt GA, Loring JF, Laurent LC, Young RA, Murry CE.
   PLoS One 2011;6(8):e22416. Epub 2011 Aug 19.
   PMID: 21886766 [PubMed - indexed for MEDLINE]  Free PMC Article   Related citations
   
6. Normal human pluripotent stem cell lines exhibit pervasive mosaic aneuploidy.
   Peterson SE, Westra JW, Rehen SK, Young H, Bushman DM, Paczkowski CM, Yung YC, Lynch CL, Tran HT, Nickey KS, Wang YC, Laurent LC, Loring JF, Carpenter MK, Chun J.
   PLoS One. 2011;6(8):e23018. Epub 2011 Aug 16.
   PMID: 21857983 [PubMed - in process]  Free PMC Article   Related citations
   
7. Targeted gene correction of laminopathy-associated LMNA mutations in patient-specific iPSCs.
   Liu GH, Suzuki K, Qu J, Sancho-Martinez I, Yi F, Li M, Kumar S, Nivet E, Kim J, Soligalla RD, Dubova I, Goebl A, Plongthongkum N, Fung HL, Zhang K, Loring JF, Laurent LC, Izpisua Belmonte JC.
   Cell Stem Cell. 2011 Jun 3;8(6):688-94. Epub 2011 May 19.
   PMID: 21596650 [PubMed - in process]  Related citations
   
8. A call for standardized naming and reporting of human ESC and iPSC lines.
   Luong MX, Auerbach J, Crook JM, Daheron L, Hei D, Lomax G, Loring JF, Ludwig T, Schlaeger TM, Smith KP, Stacey G, Xu RH, Zeng F.
   Cell Stem Cell. 2011 Apr 8;8(4):357-9.
   PMID: 21474098 [PubMed - indexed for MEDLINE]  Related citations
   
9. A bioinformatic assay for pluripotency in human cells.
   Müller FJ, Schuldt BM, Williams R, Mason D, Altun G, Papapetrou EP, Danner S, Goldmann JE, Herbst A, Schmidt NO, Aldenhoff JB, Laurent LC, Loring JF.
   Nat Methods. 2011 Apr;8(4):315-7. Epub 2011 Mar 6
   PMID:21378979[PubMed - indexed for MEDLINE]  Free full text
   
10. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture.
    Laurent, L.C., Ulitsky, I., Slavin, I., Tran, H., Schork, A., Morey, R., Lynch, C., Harness, J.V., Lee, S., Barrero, M.J., Ku, S., Martynova, M., Semechkin, R., Galat, V., Gottesfeld, J., Izpisua Belmonte, J.C., Murry, C., Keirstead, H.S., Park, H.S., Schmidt, U., Laslett, A.L., Muller, F.J., Nievergelt, C.M., Shamir, R., Loring, J.F.
    Cell Stem Cell. 2011 Jan 7;8(1):106-18
    PMID: 21211785 [PubMed - in process]  Free full text - Related citations
    
11. Equivalence of conventionally-derived and parthenote-derived human embryonic stem cells.
    Harness JV, Turovets NA, Seiler MJ, Nistor G, Altun G, Agapova LS, Ferguson D, Laurent LC, Loring JF, Keirstead HS.
    PLoS One. 2011 Jan 7;6(1):e14499.
    PMID: 21249129 [PubMed - in process] - Free PMC Article  Free full text - Related citations
    
12. Basic approaches to gene expression analysis of stem cells by microarrays. 
    Schuldt B, Lin Q, Müller FJ, Loring J.
    Methods Mol Biol. 2011;767:269-82. doi: 10.1007/978-1-61779-201-4_20.
    PMID: 21822882 [PubMed - indexed for MEDLINE]
13. FISH analysis of human pluripotent stem cells. 
    Peterson SE, Chun J, Loring J.
    Methods Mol Biol. 2011;767:191-200. doi: 10.1007/978-1-61779-201-4_14.
    PMID: 21822876 [PubMed - indexed for MEDLINE]

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