(1) Trego KS, Chernikova SB, Davalos AR, Perry JJP, Finger LD, Ng C, Tsai MS, Yannone SM, Tainer JA, Campisi J, Cooper, PK. The DNA Repair Endonuclease XPG Interacts Directly and Functionally with the WRN Helicase Defective in Werner Syndrome. Cell Cycle (2011). Accepted.
(2) Perry JJP & Tainer JA. All Stress Out Without ATM Kinase. Science Signaling (2011) April 5; 4 (167):18. Link to: PDF or Full text.
(3) Prudden, J* & Perry, JJP*, Minghua Nie, Arvai, A, C. Hitomi, Guenther, G, Tainer J.A, Boddy, M.N. DNA Repair and Global Sumoylation are Regulated by Distinct Ubc9 Non-covalent Complexes. Mol Cell Biol. (2011) Epub March 28th.
*Co-first author.
(4) Heideker J, Prudden, J, Perry JJP, Tainer JA, Boddy MN. Suppression of Spontaneous DNA damage and Genomic Instability by SUMO-targeted Ubiquitin Ligases and Rad60. PLOS genetics (2011). March 3; 7(3): e1001320.
(5) Perry JJP, Asiathamby A, Barnebey A, Kiamanesh F, Chen DJ, Han S, Tainer JA & Yannone SM. Identification of a coiled-coil in WRN that facilitates multimerization and promotes exonuclease processivity. Journal of Biological Chemistry (2010) Aug 13: 285 (33):25699-707 Epub June 1st.
(6) Perry JJP, Cotner-Gohara, E, Ellenberger T & Tainer, JA. Structural dynamics in DNA damage signaling repair. Current Opinion in Structural Biology. Invited Review (2010) June 20:1-12. Epub May 1st.
(7) Perry JJP, Shin DS & Tainer JA. The Structural Biochemistry of the Superoxide Dismutases. Invited Review. Biochemica et Biophysica (2010) Feb; 1804(2):245-262.
(8) Perry JJP, Shin DS & Tainer JA. Structural biology of Amyotrophic Lateral Sclerosis, Book Chapter of ‘Molecular mechanisms of DNA repair defects’, Editor Shamim I Ahmad, Landes Biosciences Publication, Adv Exp Med Biol. 2010;685:9-20 (2010). Epub Nov 5 (2009).
(9) Perry JJP, Harris R, Moiani, D, Olson A & Tainer JA. MAP kinase p38α C-terminal domain binding pocket characterized by crystallographic and computational Analyses. J. Mol. Biol. (2009) Aug 7; 391 (1): 1-11.
(10) Perry JJP*, Hitomi K, Tainer JA. Flexibility Promotes Fidelity. Preview. Structure (2009) May 13;17(5):633-4.
*Corresponding author.
(11) Prudden J* & Perry JJP*, Arvai A, Tainer JA & Boddy MN. A molecular mimetic of SUMO promotes DNA repair. Nature Struct. & Mol. Biol. (2009) May; 16, 509-516.
*Co-first author.
Faculty 1000 – 4.8 – ‘Must read’.
(12) Perry JJP*, Hearn AS, Cabelli DE, Lepock JR, Tainer JA, Nick HS, Silverman DN*. Contribution to structure and kinetic study of the role of tyrosine 34 in human manganese superoxide dismutase. Biochemistry (2009) April; 48 (15):3417–3424.
*Co-corresponding author.
(13) Heideker J, Perry JJP & Boddy MN. Genome stability roles for SUMO-targeted ubiquitin ligases. Invited review. DNA repair (2009) Apr 5;8(4):517-24.
(14) Mohan SS, Perry JJP, Poulose N, Nair BG, Anilkumar G. Homology modeling of Glut4, an insulin regulated facilitated glucose transporter and docking studies with ATP and its inhibitors. Journal of Biomolecular Structure and Dynamics. (2009) Feb;26(4):455-64.
(15) Perbernard S, Perry JJP, Tainer JA, Boddy MN. The Nse1-Nse3-Nse4 trimer, an Smc5-Smc6 subcomplex with DNA repair functions supported by the Nse1 RING-like motif. Mol Biol Cell. (2008) Oct;19(10):4099-109.
(16) Chrencik JE, Brooun A, Zhang H, Irimpam M, Hura GL, Foster SA, Perry JJP, Ramage P, Widmer H, Bokach, Tainer JA, Gisbert Wechbecker, Kuhn P. Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1. J. Mol. Biol. (2008) Jul 25;380(5):828-43.
(17) Perry JJP, Tainer JA, Boddy MN, A SIM-ultaneous role for SUMO and Ubiquitin. Invited Review. Trends in Biochemical Science (2008) May;33(5):201-8. Cover Article.
(18) Perry JJP* & Tainer JA, Structural biology of Cockayne syndrome, Book Chapter of ‘Molecular mechanisms of Cockayne syndrome’, Editor Shamim I Ahmad, Landes Biosciences Publication, Epub Mar 27 (2008).
*Corresponding Author.
(19) Prudden J, Pebernard S, Raffa G, Slavin DA, Perry JJP, Tainer JA, McGowan CH, Boddy MN, SUMO-targeted ubiquitin ligases in genome stability. EMBO J. (2007) Sep 19;26(18):4089-101.
Faculty 1000 – 6.0 – ‘Must Read’, Nature Reviews Molecular Cell Biology Research Highlight, and Science-STKE Editor’s Choice.
(20) Perry JJP, Fan L, Tainer JA. Developing master keys to brain pathology, cancer and aging from the structural biology of proteins controlling reactive oxygen species and DNA repair. Neuroscience (2007) Apr 14;145(4):1280-1299.
(21) Perry JJP, Yannone SM, Holden LG, Hitomi C, Asaithamby A, Han S, Cooper PK, Chen DJ & Tainer JA. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nature Struct. Mol. Biol. (2006) May; 13 (5), p414-422.
(22) Ren X, Tu C, Bhatt D, Perry JJP, Tainer JA, Cabelli DE, & Silverman DE. Kinetic and structural characterization of human manganese superoxide dismutase containing 3-fluorotyrosine. Journal of Molecular Structure (2006) 1-3, 168-173, Jun 5.
(23) Ayala I, Perry JJP, Szczepanski J, Tainer JA, Vala MT, Nick HS & Silverman DN. Hydrogen bonding in human manganese superoxide dismutase containing 3-fluorotyrosine. Biophys. J. (2005) Dec;89(6):4171-9.
(24) Greenleaf WB, Perry JJP, Hearn AS, Cabelli DE, Lepock JR, Stroupe ME, Tainer JA, Nick HS & Silverman DN. Role of hydrogen bonding in the active site of human manganese superoxide dismutase. Biochemistry (2004) Jun 8;43(22):7038-7045.
(25) Burke DF, Deane CM, Nagarajaram HA, Campillo N, Martin-Martinez M, Mendes J, Molina F, Perry J, Reddy BV, Soares CM, Steward RE, Williams M, Carrondo MA, Blundell TL, & Mizuguchi K. An iterative structure-assisted approach to sequence alignment and comparative modeling. Proteins: Struct. Funct. Genet. (1999) Suppl. 3(9):55-60.
