Genomics Core

About

Services

Instruments

Sequencing

1. Element Aviti
2. Illumina Nextseq200
3. Oxford Nanopore Minion

Genomics Assays

1. 10X Genomics Chromium X (single cell)
2. NanoString (Bruker) GeoMX digital spatial profiler

RNA/DNA analysisAgilent Bioanalyzer 2100

1. Agilent Tapestation
2. Thermo Fisher Qubit
3. Thermo Fisher Fluoroskan Microplate Fluorometer
4. SpectraMax Mini Multi-Mode Microplate Reader

Microarray

1. MicroGrid II contact microarray printer
2. Innoscan 1100AL confocal microarray scanner

Liquid handling

1. Opentrons (OT-2)
2. Eppendorf epMotion 5075
3. SPT Labtech Mosquito HV

PCR

1. Bio-Rad QX200 digital droplet PCR

Publications

Sample Submission

Internal Users:

• First-time internal users need to request access to the genomics core and submit a service request through ELAN INFINITY (Located in MyApps).
• Please follow the instructions listed within the ELAN INFINITY Scripps Genomics Core Submission Portal. There will be a link within the portal for you to download the Genomics Core Project Submission Sheet
• Use the Genomics Core Project Submission Sheet to provide the technical information for your project. Email completed form to sequencing@scripps.edu and your point of contact (POC) staff scientist.
• Sample drop off:
  • Option 1: Bring your samples to the genomics core and hand off to the core staff;
  • Option 2: Leave your samples in the sample drop off freezer located outside of MB-28. To use the sample drop-off freezer option, your samples must be in a box/bag, clearly labeled with your name, PI name, and drop off date. Please take a picture of your samples in the freezer and email to John or Jessica.

External Users:

• First-time external users need to contact Sheila at shkay@scripps.edu 858-784-2084 to set up an IDEA ELAN INFINITY account.
• Please follow the instructions listed within the ELAN INFINITY Scripps Genomics Core Submission Portal. There will be a link within the portal for you to download the Genomics Core Project Submission Sheet
• Use the Genomics Core Project Submission Sheet to provide the technical information for your project. Email completed form to dnaseq@scripps.edu and your point of contact (POC) staff scientist.
• Please note that our shipping address is different than our laboratory physical address. Shipment using the incorrect address may delay the project timeline.

Shipping Address:

Attn: (list contact person at the Genomics Core Facility)
Genomics Core Facility
9060 Activity Rd Unit F
MB28
San Diego, CA 92126

Contact Us