PROTEIN-DNA INTERACTIONS

Relevant publications

• Roberts, V. A., (2015) "C-terminal domain of integrase binds between the two active sites", J. Chem. Theory Comput., 11, 4500-4511.
• Roberts, V. A., Pique, M. E., Ten Eyck, L. F., Li, S., (2013) "Predicting protein-DNA interactions by full search computational docking", Proteins, 81, 2106-2118.
• Roberts, V. A., Pique, M. E., Hsu, S., Li, S., Slupphaug, G., Rambo, R. P., Jamison, J. W., Liu, T., Lee, J. H., Tainer, J. A., Ten Eyck, L. F., Woods, V. L. Jr., (2012) "Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase", Nuc. Acids. Res., 40, 6070-6081.
• Fan L., Fuss J.O., Cheng Q.J., Arvai A.S., Hammel M., Roberts V.A., Cooper P.K., Tainer J.A., (2008) "XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations", Cell, 133, 789-800.
• Fan, L. and Roberts, V. A., (2006) "Complex of Linker Histone H5 with the Nucleosome and Its Implications for Chromatin Packing", Proc. Natl. Acad. Sci. USA, 103, 8384-8389.
• Roberts, V. A., Case, D. A., and Tsui, V., (2004) "Predicting Interactions of Winged-Helix Transcription Factors with DNA", Proteins, 57, 172-187.
• Adesokan, A. A., Roberts, V. A., Lee, K. W., Lins, R. D., and Briggs, J. M., (2003) "Prediction of HIV-1 Integrase/Viral DNA Interactions in the Catalytic Domain by Fast Molecular Docking" J. Med. Chem., 47, 821-828.