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MMTSB

A Server for Virus Structure & Assembly Analysis Association Energies, Residuewise contributions, Assembly Pathways and Quasi-equivalent contacts by Vijay Reddy e-mail: reddyv@scripps.edu

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Methodology:
The free energies of association are calculated based on the simple method of estimating the buried accessible surface area times the atomic solvation parameters. These association energies are used to calculate likely pathways of virus/protein assemblies.

References:

• Reddy, V.S., Giesing, H.A., Morton, R.T., Kumar, A., Post, C.B., Brooks, C.L. & Johnson J.E. (1998),
  Biophys. J.,74, 546-558.
  
• Eisenberg, D. & McLachlan A.D. (1986), Nature, 319, 199-203
  
• Horton, N. and Lewis, M. (1992), Protein Science, 1 , 169-181.
  

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Your e-mail address

Your name and address

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ONE-LINE description of your virus/protein:


Choose the type of Analysis
Assocation energies + Buried Surface Areas Residuewise contributions at various interfaces Assembly pathway Quasi-equivalent interactions (help)

Paste the coordinates of your Protein Assembly : ( help)


Paste/Type in the NCS rotation matrices of your Protein Assembly : ( help)
(FORMAT: 4(rows) x 3(columns), the 4th row corresponds to translation vector)



Processing mode: Batch (results will be returned to you by E-MAIL)

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