The PredictProtein server
PHDsec, PHDacc, PHDhtm, PHDtopology, TOPITS, MaxHom, EvalSec
Burkhard Rost
Expert version with all options (
click
for simple version with default options)
Your e-mail address
Your name and address
For
commercial users only,
password
Which type of prediction do you require?
secondary structure + solvent accessibility
topology for helical transmembrane proteins (new)
helical transmembrane segments (old)
prediction-based threading
secondary structure only
solvent accessibility only
evaluate prediction accuracy
(
help
)
Output options:
Specify the format for the returned multiple-sequence alignment:
MSF format (default)
HSSP format
HSSP format with profiles
no alignment returned
(
help
)
return probabilities for graphical display (
help
)
return PHD predictions additionally in column format (
help
)
return PHD predictions additionally in MSF format (
help
)
return PHD predictions additionally in CASP2 format (
help
)
return concise results (
help
)
A one-line description of your protein:
Specify the format of your sequence(s), alignment, or prediction:
a single sequence (a string of amino acids in one-letter code)
a multiple-sequence alignment (in MSF-format)
a multiple-sequence alignment (in SAF-format)
a list of sequences (in PIR-format)
a list of sequences (in FASTA-format)
a prediction of secondary structure and accessibility (in COLUMN-format)
an observation and prediction of secondary structure (in COLUMN-format)
(
help
)
Paste or type your sequence(s), alignment, or prediction below:
(For retrieving protein sequences from databases we recommend
SRS 5
)
Processing mode:
batch (prediction returned by email, if correct address given!)
interactive (will be switched to email response after 5 minutes)
How long to wait?
Other WWW services for sequence analysis
