Psi-Blast: psi-nr85  ncbi     FFAS03 vs. PDB0706      PDB-Blast vs. PDB0706      Blast vs. PDB0706 
FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
This master-slave alignment does not show gaps in the query sequence.
Please, use ali links, to see full alignments between query and template sequences.
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# Score Template Psi-Blast/align/model Result vs. %id First NLLHFINEQNRWFTIKELSDYLQVADKTVRKYLKLLEDEIPPSWNLLVQKGKGIYLKKPLNESLSFVESKILRKSLNLQICEELVFKKNSMQSLAQKLHLQVGALYPIINQINYDIQSSHLNIKKKPLEISGREQDVRVFMLRLYCNIPNDYWPFPYINKQNITDLINKMEKILNVQMYTYSKHKLCVLFAITISRLLSGNTIDNVSGLILVNXNDDHYKTVASITSELQNSFGVTLHETEISFLALALLLSLGNSITTDSNKTLTSYKKTIMPLAKEITKGIEHKLQLGINYDESFLTYVVLIIKKALDKNFIQYYNYNIKFIRHIKQRHPNTFNTIQECISNLNYTVYSHFDCYEISLLTMHFETQRMLFKNNPKKIYVYTSQGCIHREYISALLEKRYNGLIKIVRNTIINLTNESLQDMEIDIIISNVNLPIKNIPIVQISEFPTERDFHEIKKII Last
1 -39.400 1h99_A mol:protein length:224 TRANSCRIPTION ANTITERMINATOR LICT  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  14  1 ...................................................................................................................................GAMEKFKTLLYDI-----------PIECMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNII--------NITKVMEEILSIVKYHFKIEFNEESLHYYRFVTDLKFFAQRLFNGMESEDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIDIERVVKQA........................................................................................ 224
2 -37.300 1tlv_A mol:protein length:221 Transcription antiterminator licT  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  15  13 ..........................................................................................................................................................IPIECMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEEMPNII--------NITKVMQEILSIVKYHFKIEFNEESLHYYRFVTHLKFFAQRLFNGMESQDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIHIERVV........................................................................................... 221
3 -22.100 1tvm_A mol:protein length:113 PTS system, galactitol-specific IIB component  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  12  7 .................................................................................................................................................................................................................................................................................................................................................................................LYFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSDIPLVHGMPFVSGVGIEALQNKI 99
4 -14.400 1j5y_A mol:protein length:187 TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR F  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  7  19 SIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLR----SLGYNIVATPRGYVLAGGKSGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEH--IRGIIDVSSEEEVLKFVNLME.................................................................................................................................................................................................................................................................................................................................................... 137
5 -12.600 1vkr_A mol:protein length:125 mannitol-specific PTS system enzyme IIABC com  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  16  11 .....................................................................................................................................................................................................................................................................................................................................................................................SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAISVTNSAINNLPP------DVDLVITHRDLTERQAQHISLTNFLDSGLYTSLTERL 101
6 -11.900 1on1_A mol:protein length:142 Transcriptional regulator mntR  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  15  11 EQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL----DKDEYLIYEKYRGLVLT-----------------SKGKKIGKRLVYRHELLEQFLRIIGVDEEKIYNDVEGIEHHLSWNSID.................................................................................................................................................................................................................................................................................................................................................. 111
7 -11.100 2d1h_A mol:protein length:109 109aa long hypothetical transcriptional regul  psi-nr85 ncbi ali scwrl  28  25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE...................................................................................................................................................................................................................................................................................................................................................................................................................................... 62
8 -9.920 1xcv_A mol:protein length:139 Diphtheria toxin repressor mutant  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  8  13 RTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME----RDGLVVVASDRSLQMTPTGRTLATAVMR--KARLAERLLTDIIGLDINKVHDEADR--WEHVMSDEVERRLVKVLKD...................................................................................................................................................................................................................................................................................................................................................... 122
9 -9.050 1u78_A mol:protein length:141 transposable element tc3 transposase  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  14  15 ..LDVMKLLN--VSLHEMSRKISRSRHCIRVYLKD---------------------PVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNEL-ASKRTILNVIKR............................................................................................................................................................................................................................................................................................................................................................. 102
10 -8.950 1xd7_A mol:protein length:145 ywnA  psi-nr85 ncbi ali scwrl  COG0706 JCSG0706 PDB0706 PfamA200 SCOP169  12  14 ..ILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLK----KADILTSRAGVASLKKDPADISLLEVYRAVQKQE---ELFAVHENPNPKCPVGKKIQNALDETFESVQRAMENELASKSLKDVMNHLFEGGS....................................................................................................................................................................................................................................................................................................................................... 139


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Last modified on Thu July 20 13:37:24 PST 2006